anhima
Locating samples and variants
Genotypes
Allele frequencies
Site frequencies
Doubleton sharing
Linkage disequilibrium
Genetic distance
Principal components analysis
Multidimensional scaling
Trees
Pedigrees (families and crosses)
Input/output utilities
HDF5 utilities
Miscellaneous utilities
Simulations
anhima
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Overview: module code
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anhima.af
anhima.dist
anhima.f2
anhima.gt
anhima.h5
anhima.io
anhima.ld
anhima.loc
anhima.mds
anhima.pca
anhima.ped
anhima.sf
anhima.sim
anhima.tree
anhima.util
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